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Applets for Neural Network and Artificial Life - A list of programs using alife type techniques (English/Japanese).
Archis Evolutionary System Simulator - An artificial life simulator project that can also function as a genetic programming system. Written in Java with a graphical interface.
Artificial Life by Jpr - Introduction to artificial life. Each chapter is illustrated by a program or an applet. Chapters are available in PDF.
Artificial Life on the Web - A web-oriented artificial-life site: Alife, genetic-algorithm and cellular-automata experiments written in cross-platform web languages (Java, tcl/tk), with free source code.
The Breve Simulation Environment - MacOSX software for simulation of artificial life and decentralized systems.
BugBots - BugBots is a game, sort of. Really it's a project in Artificial Intelligence, and Object Oriented Design with heavy abstraction.
Chaco the Chaos Collection - A collection of small tools for Chaos Modelling, based on ideas of Life game, Tierra and others.
Darwinbots - A free artificial life program running under Windows. Similar to C-Robots with a biological bent, where the robots mutate and evolve over time.
Electric Sheep Screen-saver - Electric Sheep realizes the collective dream of sleeping computers from all over the internet. Free; Linux, MacOS X.
Flocking Experiment - Two flocks of birds migrating to different locations flock together before splitting apart.
Java Fish - An aquarium simulation written in Java. The program uses neural networks for all of the fish being simulated, and the fish are artificially evolved from random starting information.
Kasprzyk's ALife Page - Artificial Life for the Macintosh.
Life Simulation Game - An artificial world of lifeforms which eat, move and reproduce. Each species is controlled by a program, and you can write your own lifeforms.
Manna Mouse - Exploration of fitness landscapes.
Physis - Physis is a software platform for testing the evolvability of different assembly-like programming languages.
PS-I - A sourceforge project for an environment for creating and running agent-based models. Tcl/Tk scriptable, cross-platform (Windows and Linux/Unix).